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GrainGenes Locus Report: POPA2_0421

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Locus
POPA2_0421  [ Marker Report ]
Type
SNP
Synonym
Other name12_20421
BOPA2_12_20421
Synonym12_20421
Chromosome
3H
Chromosome Arm
3HL
Map
Barley, 2012 9KSNP 3H138.7
Hordeum-OPA-2009-3H154.31
Hordeum-OPA123-2008-3H154.31
Hordeum-OPAConsensus-2011-3H162.17
Hordeum-OWB-OPA2008-3H186.106
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Map Data
Barley, 2012 9KSNP
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Barley, OWB, OPA2008
Species
Hordeum vulgare
Sequence
HVVMRXALLhA0430A17
Probe
HAR35_1452
i_12_20421
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 13 ]
Marker name in barley Pilot OPA1 = 2_0421
Marker name in barley OPA1 = 12_20421
Original SNP name = 2825-1609
Most representative HarvEST:Barley Assembly #32 Unigene = 2825
Most representative HarvEST:Barley Assembly #35 Unigene = 1452
HarvEST Unigene 35 Probe Set = HV14H04u_s_at; baal31g17_s_at
Unigene 35 Rice Locus = LOC_Os02g26650
Description for best rice BLAST hit to Unigene 35 member = 7-dehydrocholesterol reductase, putative, expressed; E value = 0
Marker name in barley Pilot OPA2 = 2_0421
Marker name in barley OPA2 = 12_20421
HarvEST Unigene 35 Probe Set = HV14H04u_s_at, baal31g17_s_at
Description for best rice BLAST hit to Unigene 35 member = protein 7-dehydrocholesterol reductase, putative, expressed; E value = 0
BLAST hit in the rice genome = 7-dehydrocholesterol reductase, putative, expressed