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GrainGenes Locus Report: POPA2_0475

[Submit comment/correction][What is a locus?] A genetic locus is a specific position on a chromosome where a gene or genetic marker is located.

Locus
POPA2_0475  [ Marker Report ]
Type
SNP
Probe
HAR35_1384
i_11_20475
Synonym
Other name11_20475
BOPA1_11_20475
BOPA1_3087-1763
Synonym11_20475
Chromosome
1H
Chromosome Arm
1HL
Map
Barley, 2012 9KSNP 1H86.8
Hordeum-OPA-2009-1H92.8
Hordeum-OPA123-2008-1H92.8
Hordeum-OPAConsensus-2011-1H93.48
Hordeum-OWB-OPA2008-1H101.94
[ Show Nearby Loci ]
Map Data
Barley, 2012 9KSNP
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Barley, OWB, OPA2008
Species
Hordeum vulgare
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 13 ]
Marker name in barley Pilot OPA1 = 2_0475
Marker name in barley OPA1 = 11_20475
Original SNP name = 3087-1763
Most representative HarvEST:Barley Assembly #32 Unigene = 3087
Most representative HarvEST:Barley Assembly #35 Unigene = 1384
HarvEST Unigene 35 Probe Set = Contig5642_at; Contig5643_s_at
Unigene 35 Rice Locus = LOC_Os05g35710
Description for best rice BLAST hit to Unigene 35 member = expressed protein; E value = 0
Marker name in barley Pilot OPA2 = 2_0475
Original SNP name = U32_4421_1432
HarvEST Unigene 35 Probe Set = Contig5642_at, Contig5643_s_at
Description for best rice BLAST hit to Unigene 35 member = protein expressed protein; E value = 0
BLAST hit in the rice genome = expressed protein

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