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GrainGenes Locus Report: POPA2_0481

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Locus
POPA2_0481  [ Marker Report ]
Type
SNP
Chromosome
5H
Map
Hordeum-OWB-OPA2008-5H58.35
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus
Barley, OWB, OPA2008
Sequence
HVVMRXALLhA0127N19
Probe
HAR35_15829
Reference
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Remark
[ Hide all but 1 of 7 ]
Marker name in barley Pilot OPA1 = 2_0481
Most representative HarvEST:Barley Assembly #32 Unigene = 3118
Most representative HarvEST:Barley Assembly #35 Unigene = 15829
HarvEST Unigene 35 Probe Set = Contig4405_x_at
Unigene 35 Rice Locus = LOC_Os12g36830
Description for best rice BLAST hit to Unigene 35 member = pathogenesis-related protein 10, putative, expressed; E value = 3E-40
BLAST hit in the rice genome = pathogenesis-related protein 10, putative, expressed