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GrainGenes Locus Report: POPA2_0524

[Submit comment/correction][What is a locus?] A genetic locus is a specific position on a chromosome where a gene or genetic marker is located.

Locus
POPA2_0524  [ Marker Report ]
Type
SNP
Probe
HAR35_16160
i_11_20524
Synonym
Other name11_20524
BOPA1_11_20524
BOPA1_3326-1954
Synonym11_20524
Chromosome
5H
Chromosome Arm
5HL
Map
Hordeum-OPA-2009-5H51.6
Hordeum-OPA123-2008-5H51.6
Hordeum-OPAConsensus-2011-5H42.41
Hordeum-OWB-OPA2008-5H58.35
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Barley, OWB, OPA2008
Species
Hordeum vulgare
Sequence
HVVMRXALLhA0603E02
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 13 ]
Marker name in barley Pilot OPA1 = 2_0524
Marker name in barley OPA1 = 11_20524
Original SNP name = 3326-1954
Most representative HarvEST:Barley Assembly #32 Unigene = 3326
Most representative HarvEST:Barley Assembly #35 Unigene = 16160
HarvEST Unigene 35 Probe Set = Contig4734_at; Contig4734_s_at
Unigene 35 Rice Locus = LOC_Os12g07670
Description for best rice BLAST hit to Unigene 35 member = transmembrane 9 superfamily protein member 3 precursor, putative, expressed; E value = 0
Marker name in barley Pilot OPA2 = 2_0524
Original SNP name = ABC12038_1_1_682
HarvEST Unigene 35 Probe Set = Contig4734_at, Contig4734_s_at
Description for best rice BLAST hit to Unigene 35 member = protein transmembrane 9 superfamily protein member 3 precursor, putative, expressed; E value = 0
BLAST hit in the rice genome = transmembrane 9 superfamily protein member 3 precursor, putative, expressed

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