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GrainGenes Locus Report: POPA2_0536

[Submit comment/correction][What is a locus?] A genetic locus is a specific position on a chromosome where a gene or genetic marker is located.

Locus
POPA2_0536  [ Marker Report ]
Type
SNP
Probe
HAR35_16285
i_11_20536
Synonym
Other name11_20536
BOPA1_11_20536
BOPA1_3362-644
Synonym11_20536
Chromosome
5H
Chromosome Arm
5HL
Map
Barley, 2012 9KSNP 5H157.4
Hordeum-OPA-2009-5H177.65
Hordeum-OPA123-2008-5H177.65
Hordeum-OPAConsensus-2011-5H168.44
[ Show Nearby Loci ]
Map Data
Barley, 2012 9KSNP
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Species
Hordeum vulgare
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 12 ]
Marker name in barley Pilot OPA1 = 2_0536
Marker name in barley OPA1 = 11_20536
Original SNP name = 3362-644
Most representative HarvEST:Barley Assembly #32 Unigene = 3362
Most representative HarvEST:Barley Assembly #35 Unigene = 16285
HarvEST Unigene 35 Probe Set = Contig4793_s_at
Unigene 35 Rice Locus = LOC_Os03g61810
Description for best rice BLAST hit to Unigene 35 member = cytidine/deoxycytidylate deaminase family protein, putative, expressed; E value = 2E-98
Marker name in barley Pilot OPA2 = 2_0536
Original SNP name = U35_3810_482
Description for best rice BLAST hit to Unigene 35 member = protein cytidine/deoxycytidylate deaminase family protein, putative, expressed; E value = 2E-98
BLAST hit in the rice genome = cytidine/deoxycytidylate deaminase family protein, putative, expressed

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