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GrainGenes Locus Report: POPA2_0551

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Locus
POPA2_0551  [ Marker Report ]
Type
SNP
Synonym
Other name11_20551
BOPA1_11_20551
BOPA1_3412-579
Synonym11_20551
Chromosome
5H
Chromosome Arm
5HL
Map
Barley, 2012 9KSNP 5H130.3
Hordeum-OPA-2009-5H143.27
Hordeum-OPA123-2008-5H143.27
Hordeum-OPAConsensus-2011-5H138.25
Hordeum-OWB-OPA2008-5H168.135
[ Show Nearby Loci ]
Map Data
Barley, 2012 9KSNP
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Barley, OWB, OPA2008
Species
Hordeum vulgare
Sequence
HVVMRXALLhA0179F17
Probe
HAR35_15899
i_11_20551
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source
Close, Timothy J.
Remark
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Marker name in barley Pilot OPA1 = 2_0551
Marker name in barley OPA1 = 11_20551
Original SNP name = 3412-579
Most representative HarvEST:Barley Assembly #32 Unigene = 3412
Most representative HarvEST:Barley Assembly #35 Unigene = 15899
HarvEST Unigene 35 Probe Set = Contig4842_s_at; Contig4843_at
Unigene 35 Rice Locus = LOC_Os03g56190
Description for best rice BLAST hit to Unigene 35 member = expressed protein; E value = 9E-37
Marker name in barley Pilot OPA2 = 2_0551
Original SNP name = U35_5362_1110
HarvEST Unigene 35 Probe Set = Contig4842_s_at, Contig4843_at
Description for best rice BLAST hit to Unigene 35 member = protein expressed protein; E value = 9E-37
BLAST hit in the rice genome = expressed protein