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GrainGenes Locus Report: POPA2_0560

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Locus
POPA2_0560  [ Marker Report ]
Type
SNP
Synonym
Other name11_20560
BOPA1_11_20560
BOPA1_3443-1234
Synonym11_20560
Chromosome
5H
Chromosome Arm
5HL
Map
Barley, 2012 9KSNP 5H146.1
Hordeum-OPA-2009-5H160.51
Hordeum-OPA123-2008-5H160.51
Hordeum-OPAConsensus-2011-5H156.27
Hordeum-OWB-OPA2008-5H193.955
[ Show Nearby Loci ]
Map Data
Barley, 2012 9KSNP
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Barley, OWB, OPA2008
Species
Hordeum vulgare
Probe
HAR35_15729
i_11_20560
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 11 ]
Marker name in barley Pilot OPA1 = 2_0560
Marker name in barley OPA1 = 11_20560
Original SNP name = 3443-1234
Most representative HarvEST:Barley Assembly #32 Unigene = 3443
Most representative HarvEST:Barley Assembly #35 Unigene = 15729
HarvEST Unigene 35 Probe Set = Contig5150_s_at
Unigene 35 Rice Locus = LOC_Os03g59360
Description for best rice BLAST hit to Unigene 35 member = remorin, putative, expressed; E value = 1E-100
Marker name in barley Pilot OPA2 = 2_0560
Description for best rice BLAST hit to Unigene 35 member = protein remorin, putative, expressed; E value = 1E-100
BLAST hit in the rice genome = remorin, putative, expressed