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GrainGenes Locus Report: POPA2_0572

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Locus
POPA2_0572  [ Marker Report ]
Type
SNP
Synonym
Other name11_20572
BOPA1_11_20572
BOPA1_3506-668
Synonym11_20572
Chromosome
6H
Chromosome Arm
6HL
Map
Barley, 2012 9KSNP 6H55
Hordeum-OPA-2009-6H55.65
Hordeum-OPA123-2008-6H55.65
Hordeum-OPAConsensus-2011-6H59.25
Hordeum-OWB-OPA2008-6H67.419
[ Show Nearby Loci ]
Map Data
Barley, 2012 9KSNP
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Barley, OWB, OPA2008
Species
Hordeum vulgare
Sequence
HVVMRXALLhA0439D23
Probe
HAR35_16093
i_11_20572
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 13 ]
Marker name in barley Pilot OPA1 = 2_0572
Marker name in barley OPA1 = 11_20572
Original SNP name = 3506-668
Most representative HarvEST:Barley Assembly #32 Unigene = 3506
Most representative HarvEST:Barley Assembly #35 Unigene = 16093
HarvEST Unigene 35 Probe Set = Contig4895_at; Contig4895_s_at
Unigene 35 Rice Locus = LOC_Os02g38190
Description for best rice BLAST hit to Unigene 35 member = expressed protein; E value = 9E-90
Marker name in barley Pilot OPA2 = 2_0572
Original SNP name = U35_18879_1771
HarvEST Unigene 35 Probe Set = Contig4895_at, Contig4895_s_at
Description for best rice BLAST hit to Unigene 35 member = protein expressed protein; E value = 9E-90
BLAST hit in the rice genome = expressed protein