Query (optional)   in Class  

GrainGenes Locus Report: POPA2_0594

[ Printable Version ]  [ Submit comment/correction ]

Locus
POPA2_0594  [ Marker Report ]
Type
SNP
Synonym
Other name11_20594
BOPA1_11_20594
BOPA1_3639-969
Synonym11_20594
Chromosome
1H
Chromosome Arm
1HL
Map
Hordeum-OPA-2009-1H136.31
Hordeum-OPA123-2008-1H136.31
Hordeum-OPAConsensus-2011-1H139.6
Hordeum-OWB-OPA2008-1H154.1
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Barley, OWB, OPA2008
Species
Hordeum vulgare
Sequence
HVVMRXALLhA0306E02
Probe
HAR35_2103
i_11_20594
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 12 ]
Marker name in barley Pilot OPA1 = 2_0594
Marker name in barley OPA1 = 11_20594
Original SNP name = 3639-969
Most representative HarvEST:Barley Assembly #32 Unigene = 3639
Most representative HarvEST:Barley Assembly #35 Unigene = 2103
HarvEST Unigene 35 Probe Set = Contig5087_at; HY03I24u_s_at
Unigene 35 Rice Locus = LOC_Os05g51180
Description for best rice BLAST hit to Unigene 35 member = plasminogen activator inhibitor 1 RNA-binding protein, putative, expressed; E value = 1E-116
Marker name in barley Pilot OPA2 = 2_0594
HarvEST Unigene 35 Probe Set = Contig5087_at, HY03I24u_s_at
Description for best rice BLAST hit to Unigene 35 member = protein plasminogen activator inhibitor 1 RNA-binding protein, putative, expressed; E value = 1E-116
BLAST hit in the rice genome = plasminogen activator inhibitor 1 RNA-binding protein, putative, expressed