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GrainGenes Locus Report: POPA2_0601

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Locus
POPA2_0601  [ Marker Report ]
Type
SNP
Synonym
Synonym11_20601
Chromosome
6H
Map
Hordeum-OWB-OPA2008-6H66.332
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus
Barley, OWB, OPA2008
Sequence
HVVMRXALLhA0545M02
Probe
HAR35_16051
Reference
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Remark
[ Hide all but 1 of 9 ]
Marker name in barley Pilot OPA1 = 2_0601
Marker name in barley OPA1 = 11_20601
Original SNP name = 3659-525
Most representative HarvEST:Barley Assembly #32 Unigene = 3659
Most representative HarvEST:Barley Assembly #35 Unigene = 16051
HarvEST Unigene 35 Probe Set = Contig5091_at; Contig5092_s_at
Unigene 35 Rice Locus = LOC_Os03g07380
Description for best rice BLAST hit to Unigene 35 member = expressed protein; E value = 2E-42
BLAST hit in the rice genome = expressed protein