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GrainGenes Locus Report: POPA2_0608

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Locus
POPA2_0608  [ Marker Report ]
Type
SNP
Synonym
Other name12_20608
BOPA2_12_20608
Synonym12_20608
Chromosome
3H
Chromosome Arm
3HL
Map
Hordeum-OPA-2009-3H65.52
Hordeum-OPA123-2008-3H65.52
Hordeum-OPAConsensus-2011-3H78.25
Hordeum-OWB-OPA2008-3H71.721
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Barley, OWB, OPA2008
Species
Hordeum vulgare
Sequence
HVVMRXALLhA0335E22
Probe
HAR35_2017
i_12_20608
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 13 ]
Marker name in barley Pilot OPA1 = 2_0608
Marker name in barley OPA1 = 12_20608
Original SNP name = 3691-1359
Most representative HarvEST:Barley Assembly #32 Unigene = 3691
Most representative HarvEST:Barley Assembly #35 Unigene = 2017
HarvEST Unigene 35 Probe Set = Contig5187_at; Contig5188_s_at
Unigene 35 Rice Locus = LOC_Os10g31520
Description for best rice BLAST hit to Unigene 35 member = ribosomal RNA assembly protein mis3, putative, expressed; E value = 0
Marker name in barley Pilot OPA2 = 2_0608
Marker name in barley OPA2 = 12_20608
HarvEST Unigene 35 Probe Set = Contig5187_at, Contig5188_s_at
Description for best rice BLAST hit to Unigene 35 member = protein ribosomal RNA assembly protein mis3, putative, expressed; E value = 0
BLAST hit in the rice genome = ribosomal RNA assembly protein mis3, putative, expressed