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GrainGenes Locus Report: POPA2_0612

[Submit comment/correction][What is a locus?] A genetic locus is a specific position on a chromosome where a gene or genetic marker is located.

Locus
POPA2_0612  [ Marker Report ]
Type
SNP
Probe
HAR35_16293
i_11_20612
Synonym
Other name11_20612
BOPA1_11_20612
BOPA1_3718-1026
Synonym11_20612
Chromosome
3H
Chromosome Arm
3HL
Map
Barley, 2012 9KSNP 3H117
Hordeum-OPA-2009-3H131.59
Hordeum-OPA123-2008-3H131.59
Hordeum-OPAConsensus-2011-3H139.66
Hordeum-OWB-OPA2008-3H155.924
[ Show Nearby Loci ]
Map Data
Barley, 2012 9KSNP
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Barley, OWB, OPA2008
Species
Hordeum vulgare
Sequence
HVVMRXALLhA0728M05
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 11 ]
Marker name in barley Pilot OPA1 = 2_0612
Marker name in barley OPA1 = 11_20612
Original SNP name = 3718-1026
Most representative HarvEST:Barley Assembly #32 Unigene = 3718
Most representative HarvEST:Barley Assembly #35 Unigene = 16293
HarvEST Unigene 35 Probe Set = Contig5214_at
Unigene 35 Rice Locus = LOC_Os01g68860
Description for best rice BLAST hit to Unigene 35 member = zinc finger CCCH type domain-containing protein ZFN-like 2, putative, expressed; E value = 0
Marker name in barley Pilot OPA2 = 2_0612
Description for best rice BLAST hit to Unigene 35 member = protein zinc finger CCCH type domain-containing protein ZFN-like 2, putative, expressed; E value = 0
BLAST hit in the rice genome = zinc finger CCCH type domain-containing protein ZFN-like 2, putative, expressed

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