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GrainGenes Locus Report: POPA2_0682

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Locus
POPA2_0682  [ Marker Report ]
Type
SNP
Synonym
Other name11_20682
BOPA1_11_20682
BOPA1_4109-90
Synonym11_20682
Chromosome
6H
Chromosome Arm
6HL
Map
Barley, 2012 9KSNP 6H71.9
Hordeum-OPA-2009-6H75.21
Hordeum-OPA123-2008-6H75.21
Hordeum-OPAConsensus-2011-6H84.47
Hordeum-OWB-OPA2008-6H96.399
[ Show Nearby Loci ]
Map Data
Barley, 2012 9KSNP
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Barley, OWB, OPA2008
Species
Hordeum vulgare
Sequence
HVVMRXALLhA0740F09
Probe
HAR35_2345
i_11_20682
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 12 ]
Marker name in barley Pilot OPA1 = 2_0682
Marker name in barley OPA1 = 11_20682
Original SNP name = 4109-90
Most representative HarvEST:Barley Assembly #32 Unigene = 4109
Most representative HarvEST:Barley Assembly #35 Unigene = 2345
HarvEST Unigene 35 Probe Set = Contig5703_at; HVSMEn0013N19f_s_at
Unigene 35 Rice Locus = LOC_Os02g51620
Description for best rice BLAST hit to Unigene 35 member = beta-D-xylosidase, putative, expressed; E value = 0
Marker name in barley Pilot OPA2 = 2_0682
HarvEST Unigene 35 Probe Set = Contig5703_at, HVSMEn0013N19f_s_at
Description for best rice BLAST hit to Unigene 35 member = protein beta-D-xylosidase, putative, expressed; E value = 0
BLAST hit in the rice genome = beta-D-xylosidase, putative, expressed