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GrainGenes Locus Report: POPA2_0688

Locus
POPA2_0688  [ Marker Report ]
Type
SNP
Synonym
Other name12_20688
BOPA2_12_20688
Synonym12_20688
Chromosome
2H
Chromosome Arm
2HS
Map
Hordeum-OPA-2009-2H51.75
Hordeum-OPA123-2008-2H51.75
Hordeum-OPAConsensus-2011-2H55.46
Hordeum-OWB-OPA2008-2H65.094
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Barley, OWB, OPA2008
Species
Hordeum vulgare
Sequence
HVVMRXALLhA0111J09
Probe
HAR35_16176
i_12_20688
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 12 ]
Marker name in barley Pilot OPA1 = 2_0688
Marker name in barley OPA1 = 12_20688
Original SNP name = 4131-605
Most representative HarvEST:Barley Assembly #32 Unigene = 4131
Most representative HarvEST:Barley Assembly #35 Unigene = 16176
HarvEST Unigene 35 Probe Set = Contig5728_at
Unigene 35 Rice Locus = LOC_Os07g44330
Description for best rice BLAST hit to Unigene 35 member = protein kinase, mitochondrial precursor, putative, expressed; E value = 0
Marker name in barley Pilot OPA2 = 2_0688
Marker name in barley OPA2 = 12_20688
Description for best rice BLAST hit to Unigene 35 member = protein protein kinase, mitochondrial precursor, putative, expressed; E value = 0
BLAST hit in the rice genome = protein kinase, mitochondrial precursor, putative, expressed