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GrainGenes Locus Report: POPA2_0762

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Locus
POPA2_0762  [ Marker Report ]
Type
SNP
Synonym
Other name11_20762
BOPA1_11_20762
BOPA1_4535-1366
Synonym11_20762
Chromosome
4H
Chromosome Arm
4HL
Map
Barley, 2012 9KSNP 4H98.9
Hordeum-OPA-2009-4H98.55
Hordeum-OPA123-2008-4H98.55
Hordeum-OPAConsensus-2011-4H109
Hordeum-OWB-OPA2008-4H96.363
[ Show Nearby Loci ]
Map Data
Barley, 2012 9KSNP
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Barley, OWB, OPA2008
Species
Hordeum vulgare
Sequence
HVVMRXALLhA0440K12
Probe
HAR35_2359
i_11_20762
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source
Close, Timothy J.
Remark
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Marker name in barley Pilot OPA1 = 2_0762
Marker name in barley OPA1 = 11_20762
Original SNP name = 4535-1366
Most representative HarvEST:Barley Assembly #32 Unigene = 4535
Most representative HarvEST:Barley Assembly #35 Unigene = 2359
HarvEST Unigene 35 Probe Set = Contig6354_s_at
Unigene 35 Rice Locus = LOC_Os11g33120
Description for best rice BLAST hit to Unigene 35 member = respiratory burst oxidase protein D, putative, expressed; E value = 0
Marker name in barley Pilot OPA2 = 2_0762
Description for best rice BLAST hit to Unigene 35 member = protein respiratory burst oxidase protein D, putative, expressed; E value = 0
BLAST hit in the rice genome = respiratory burst oxidase protein D, putative, expressed