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GrainGenes Locus Report: POPA2_0784

[Submit comment/correction][What is a locus?] A genetic locus is a specific position on a chromosome where a gene or genetic marker is located.

Locus
POPA2_0784  [ Marker Report ]
Type
SNP
Probe
HAR35_2360
i_11_20784
Synonym
Other name11_20784
BOPA1_11_20784
BOPA1_4642-1124
Synonym11_20784
Chromosome
6H
Chromosome Arm
6HL
Map
Barley, 2012 9KSNP 6H68.9
Hordeum-OPA-2009-6H71.08
Hordeum-OPA123-2008-6H71.08
Hordeum-OPAConsensus-2011-6H80.06
Hordeum-OWB-OPA2008-6H93.064
[ Show Nearby Loci ]
Map Data
Barley, 2012 9KSNP
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Barley, OWB, OPA2008
Species
Hordeum vulgare
Sequence
HVVMRXALLhA0638D05
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 11 ]
Marker name in barley Pilot OPA1 = 2_0784
Marker name in barley OPA1 = 11_20784
Original SNP name = 4642-1124
Most representative HarvEST:Barley Assembly #32 Unigene = 4642
Most representative HarvEST:Barley Assembly #35 Unigene = 2360
HarvEST Unigene 35 Probe Set = Contig6455_at
Unigene 35 Rice Locus = LOC_Os10g10180
Description for best rice BLAST hit to Unigene 35 member = CMV 1a interacting protein 1, putative, expressed; E value = 1E-172
Marker name in barley Pilot OPA2 = 2_0784
Description for best rice BLAST hit to Unigene 35 member = protein CMV 1a interacting protein 1, putative, expressed; E value = 1E-172
BLAST hit in the rice genome = CMV 1a interacting protein 1, putative, expressed

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