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GrainGenes Locus Report: POPA2_0863

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Locus
POPA2_0863  [ Marker Report ]
Type
SNP
Synonym
Other name12_20863
BOPA2_12_20863
Synonym12_20863
Chromosome
3H
Chromosome Arm
3HL
Map
Hordeum-OPA-2009-3H64.19
Hordeum-OPA123-2008-3H64.19
Hordeum-OPAConsensus-2011-3H73.3
Hordeum-OWB-OPA2008-3H70.634
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Barley, OWB, OPA2008
Species
Hordeum vulgare
Sequence
HVVMRXALLhA0627O11
Probe
HAR35_16923
i_12_20863
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source
Close, Timothy J.
Remark
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Marker name in barley Pilot OPA1 = 2_0863
Marker name in barley OPA1 = 12_20863
Original SNP name = 5047-902
Most representative HarvEST:Barley Assembly #32 Unigene = 5047
Most representative HarvEST:Barley Assembly #35 Unigene = 16923
HarvEST Unigene 35 Probe Set = Contig6940_at
Unigene 35 Rice Locus = LOC_Os01g50450
Description for best rice BLAST hit to Unigene 35 member = expressed protein; E value = 2E-63
Marker name in barley Pilot OPA2 = 2_0863
Marker name in barley OPA2 = 12_20863
Description for best rice BLAST hit to Unigene 35 member = protein expressed protein; E value = 2E-63
BLAST hit in the rice genome = expressed protein