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GrainGenes Locus Report: POPA2_0889

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Locus
POPA2_0889  [ Marker Report ]
Type
SNP
Synonym
Synonym11_20889
Chromosome
6H
Chromosome Arm
6HL
Map
Hordeum-OPA-2009-6H75.21
Hordeum-OPA123-2008-6H75.21
Hordeum-OPAConsensus-2011-6H86.54
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Sequence
HVVMRXALLhA0266B19
Probe
HAR35_16471
Reference
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 12 ]
Marker name in barley Pilot OPA1 = 2_0889
Marker name in barley OPA1 = 11_20889
Original SNP name = 5172-926
Most representative HarvEST:Barley Assembly #32 Unigene = 5172
Most representative HarvEST:Barley Assembly #35 Unigene = 16471
HarvEST Unigene 35 Probe Set = Contig7055_at; HY07I12u_s_at
Unigene 35 Rice Locus = LOC_Os02g51040
Description for best rice BLAST hit to Unigene 35 member = alpha-expansin 15 precursor, putative, expressed; E value = 1E-135
Marker name in barley Pilot OPA2 = 2_0889
HarvEST Unigene 35 Probe Set = Contig7055_at, HY07I12u_s_at
Description for best rice BLAST hit to Unigene 35 member = protein alpha-expansin 15 precursor, putative, expressed; E value = 1E-135
BLAST hit in the rice genome = alpha-expansin 15 precursor, putative, expressed