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GrainGenes Locus Report: POPA2_0893

Locus
POPA2_0893  [ Marker Report ]
Type
SNP
Synonym
Other name11_20893
BOPA1_11_20893
BOPA1_5202-1199
Synonym11_20893
Chromosome
7H
Chromosome Arm
7HS
Map
Barley, 2012 9KSNP 7H70.7
Hordeum-OPA-2009-7H77.85
Hordeum-OPA123-2008-7H77.85
Hordeum-OPAConsensus-2011-7H81.78
Hordeum-OWB-OPA2008-7H80.664
[ Show Nearby Loci ]
Map Data
Barley, 2012 9KSNP
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Barley, OWB, OPA2008
Species
Hordeum vulgare
Sequence
HVVMRXALLhA0795K10
Probe
HAR35_16866
i_11_20893
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source
Close, Timothy J.
Remark
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Marker name in barley Pilot OPA1 = 2_0893
Marker name in barley OPA1 = 11_20893
Original SNP name = 5202-1199
Most representative HarvEST:Barley Assembly #32 Unigene = 5202
Most representative HarvEST:Barley Assembly #35 Unigene = 16866
HarvEST Unigene 35 Probe Set = Contig7211_at
Unigene 35 Rice Locus = LOC_Os08g43360
Description for best rice BLAST hit to Unigene 35 member = nucleic acid binding protein, putative, expressed; E value = 1E-125
Marker name in barley Pilot OPA2 = 2_0893
Description for best rice BLAST hit to Unigene 35 member = protein nucleic acid binding protein, putative, expressed; E value = 1E-125
BLAST hit in the rice genome = nucleic acid binding protein, putative, expressed