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GrainGenes Locus Report: POPA2_0983

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Locus
POPA2_0983  [ Marker Report ]
Type
SNP
Chromosome
6H
Map
Hordeum-OWB-OPA2008-6H60.873
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus
Barley, OWB, OPA2008
Sequence
HVVMRXALLhA0318N22
Probe
HAR35_15046
Reference
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Remark
[ Hide all but 1 of 7 ]
Marker name in barley Pilot OPA1 = 2_0983
Most representative HarvEST:Barley Assembly #32 Unigene = 5739
Most representative HarvEST:Barley Assembly #35 Unigene = 15046
HarvEST Unigene 35 Probe Set = Contig7663_at
Unigene 35 Rice Locus = LOC_Os12g01370
Description for best rice BLAST hit to Unigene 35 member = omega-3 fatty acid desaturase, chloroplast precursor, putative, expressed; E value = 0
BLAST hit in the rice genome = omega-3 fatty acid desaturase, chloroplast precursor, putative, expressed