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GrainGenes Locus Report: POPA2_1008

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Locus
POPA2_1008  [ Marker Report ]
Type
SNP
Synonym
Other name11_21008
BOPA1_11_21008
BOPA1_5840-659
Synonym11_21008
Chromosome
3H
Chromosome Arm
3HL
Map
Hordeum-OPA-2009-3H162.15
Hordeum-OPA123-2008-3H162.15
Hordeum-OPAConsensus-2011-3H169.29
Hordeum-OWB-OPA2008-3H192.725
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Barley, OWB, OPA2008
Species
Hordeum vulgare
Sequence
HVVMRXALLhA0509P17
Probe
HAR35_17848
i_11_21008
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 13 ]
Marker name in barley Pilot OPA1 = 2_1008
Marker name in barley OPA1 = 11_21008
Original SNP name = 5840-659
Most representative HarvEST:Barley Assembly #32 Unigene = 5840
Most representative HarvEST:Barley Assembly #35 Unigene = 17848
HarvEST Unigene 35 Probe Set = Contig7768_at; Contig7768_s_at
Unigene 35 Rice Locus = LOC_Os01g72800
Description for best rice BLAST hit to Unigene 35 member = cell division protein ftsY, putative, expressed; E value = 1E-176
Marker name in barley Pilot OPA2 = 2_1008
Original SNP name = U32_8797_283
HarvEST Unigene 35 Probe Set = Contig7768_at, Contig7768_s_at
Description for best rice BLAST hit to Unigene 35 member = protein cell division protein ftsY, putative, expressed; E value = 1E-176
BLAST hit in the rice genome = cell division protein ftsY, putative, expressed