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GrainGenes Locus Report: POPA2_1011

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Locus
POPA2_1011  [ Marker Report ]
Type
SNP
Synonym
Other name11_21011
BOPA1_11_21011
BOPA1_5850-2347
Synonym11_21011
Chromosome
5H
Chromosome Arm
5HS
Map
Barley, 2012 9KSNP 5H44.2
Hordeum-OPA-2009-5H51
Hordeum-OPA123-2008-5H51
Hordeum-OPAConsensus-2011-5H42.41
Hordeum-OWB-OPA2008-5H58.35
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Map Data
Barley, 2012 9KSNP
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Barley, OWB, OPA2008
Species
Hordeum vulgare
Sequence
HVVMRXALLhA0549N08
Probe
HAR35_16902
i_11_21011
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source
Close, Timothy J.
Remark
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Marker name in barley Pilot OPA1 = 2_1011
Marker name in barley OPA1 = 11_21011
Original SNP name = 5850-2347
Most representative HarvEST:Barley Assembly #32 Unigene = 5850
Most representative HarvEST:Barley Assembly #35 Unigene = 16902
HarvEST Unigene 35 Probe Set = Contig7986_at
Unigene 35 Rice Locus = LOC_Os06g30320
Description for best rice BLAST hit to Unigene 35 member = nucleolar complex-associated protein, expressed; E value = 0
Marker name in barley Pilot OPA2 = 2_1011
Description for best rice BLAST hit to Unigene 35 member = protein nucleolar complex-associated protein, expressed; E value = 0
BLAST hit in the rice genome = nucleolar complex-associated protein, expressed