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GrainGenes Locus Report: POPA2_1027

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Locus
POPA2_1027  [ Marker Report ]
Type
SNP
Synonym
Other name11_21027
BOPA1_11_21027
BOPA1_5945-748
Synonym11_21027
Chromosome
3H
Chromosome Arm
3HS
Map
Hordeum-OPA-2009-3H8.86
Hordeum-OPA123-2008-3H8.86
Hordeum-OPAConsensus-2011-3H12.38
Hordeum-OWB-OPA2008-3H13.214
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Barley, OWB, OPA2008
Species
Hordeum vulgare
Sequence
HVVMRXALLhA0342D08
Probe
HAR35_2781
i_11_21027
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 11 ]
Marker name in barley Pilot OPA1 = 2_1027
Marker name in barley OPA1 = 11_21027
Original SNP name = 5945-748
Most representative HarvEST:Barley Assembly #32 Unigene = 5945
Most representative HarvEST:Barley Assembly #35 Unigene = 2781
HarvEST Unigene 35 Probe Set = Contig8357_at
Unigene 35 Rice Locus = LOC_Os01g04020
Description for best rice BLAST hit to Unigene 35 member = pathogenesis-related genes transcriptional activator PTI6, putative, expressed; E value = 2E-76
Marker name in barley Pilot OPA2 = 2_1027
Description for best rice BLAST hit to Unigene 35 member = protein pathogenesis-related genes transcriptional activator PTI6, putative, expressed; E value = 2E-76
BLAST hit in the rice genome = pathogenesis-related genes transcriptional activator PTI6, putative, expressed