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GrainGenes Locus Report: POPA2_1036

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Locus
POPA2_1036  [ Marker Report ]
Type
SNP
Synonym
Other name12_21036
BOPA2_12_21036
Synonym12_21036
Chromosome
5H
Chromosome Arm
5HL
Map
Hordeum-OPA-2009-5H66.32
Hordeum-OPA123-2008-5H66.32
Hordeum-OPAConsensus-2011-5H57.04
Hordeum-OWB-OPA2008-5H70.356
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Barley, OWB, OPA2008
Species
Hordeum vulgare
Sequence
HVVMRXALLhA0378D14
Probe
HAR35_17849
i_12_21036
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 11 ]
Marker name in barley Pilot OPA1 = 2_1036
Marker name in barley OPA1 = 12_21036
Original SNP name = 6020-279
Most representative HarvEST:Barley Assembly #32 Unigene = 6020
Most representative HarvEST:Barley Assembly #35 Unigene = 17849
HarvEST Unigene 35 Probe Set = Contig7901_at
Unigene 35 Rice Locus = LOC_Os09g27210
Marker name in barley Pilot OPA2 = 2_1036
Marker name in barley OPA2 = 12_21036
Description for best rice BLAST hit to Unigene 35 member = protein lecithine cholesterol acyltransferase-like protein, putative, expressed; E value = 1E-138
BLAST hit in the rice genome = lecithine cholesterol acyltransferase-like protein, putative, expressed