Query (optional)   in Class  

GrainGenes Locus Report: POPA2_1181

[Submit comment/correction][What is a locus?] A genetic locus is a specific position on a chromosome where a gene or genetic marker is located.

Locus
POPA2_1181  [ Marker Report ]
Type
SNP
Probe
HAR35_18463
i_11_21181
Synonym
Other name11_21181
BOPA1_11_21181
BOPA1_6990-661
Synonym11_21181
Chromosome
2H
Chromosome Arm
2HL
Map
Barley, 2012 9KSNP 2H129.8
Hordeum-OPAConsensus-2011-2H155.68
Hordeum-OWB-OPA2008-2H164.561
[ Show Nearby Loci ]
Map Data
Barley, 2012 9KSNP
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OWB, OPA2008
Species
Hordeum vulgare
Sequence
HVVMRXALLhA0069O03
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Remark
[ Hide all but 1 of 9 ]
Marker name in barley Pilot OPA1 = 2_1181
Marker name in barley OPA1 = 11_21181
Original SNP name = 6990-661
Most representative HarvEST:Barley Assembly #32 Unigene = 6990
Most representative HarvEST:Barley Assembly #35 Unigene = 18463
HarvEST Unigene 35 Probe Set = Contig9312_at
Unigene 35 Rice Locus = LOC_Os04g55060
Description for best rice BLAST hit to Unigene 35 member = 3-oxoacyl-synthase III, chloroplast precursor, putative, expressed; E value = 1E-161
BLAST hit in the rice genome = 3-oxoacyl-synthase III, chloroplast precursor, putative, expressed

GrainGenes is a product of the Agricultural Research Service of the US Department of Agriculture.