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GrainGenes Locus Report: POPA2_1209

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Locus
POPA2_1209  [ Marker Report ]
Type
SNP
Synonym
Other name11_21209
BOPA1_11_21209
BOPA1_7216-297
Synonym11_21209
Chromosome
7H
Chromosome Arm
7HL
Map
Barley, 2012 9KSNP 7H120.4
Hordeum-OPA-2009-7H129.91
Hordeum-OPA123-2008-7H129.91
Hordeum-OPAConsensus-2011-7H130.64
Hordeum-OWB-OPA2008-7H145.937
[ Show Nearby Loci ]
Map Data
Barley, 2012 9KSNP
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Barley, OWB, OPA2008
Species
Hordeum vulgare
Sequence
HVVMRXALLhA0330I06
Probe
HAR35_4063
i_11_21209
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source
Close, Timothy J.
Remark
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Marker name in barley Pilot OPA1 = 2_1209
Marker name in barley OPA1 = 11_21209
Original SNP name = 7216-297
Most representative HarvEST:Barley Assembly #32 Unigene = 7216
Most representative HarvEST:Barley Assembly #35 Unigene = 4063
HarvEST Unigene 35 Probe Set = Contig9637_at; HVSMEk0016N13r2_s_at
Unigene 35 Rice Locus = LOC_Os06g45000
Description for best rice BLAST hit to Unigene 35 member = ubiquitin-conjugating enzyme E2S, putative, expressed; E value = 1E-114
Marker name in barley Pilot OPA2 = 2_1209
HarvEST Unigene 35 Probe Set = Contig9637_at, HVSMEk0016N13r2_s_at
Description for best rice BLAST hit to Unigene 35 member = protein ubiquitin-conjugating enzyme E2S, putative, expressed; E value = 1E-114
BLAST hit in the rice genome = ubiquitin-conjugating enzyme E2S, putative, expressed