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GrainGenes Locus Report: POPA2_1246

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Locus
POPA2_1246  [ Marker Report ]
Type
SNP
Synonym
Other name11_21246
BOPA1_11_21246
BOPA1_7624-359
Synonym11_21246
Chromosome
6H
Chromosome Arm
6HS
Map
Hordeum-OPA-2009-6H22.35
Hordeum-OPA123-2008-6H22.35
Hordeum-OPAConsensus-2011-6H25.88
Hordeum-OWB-OPA2008-6H31.161
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Barley, OWB, OPA2008
Species
Hordeum vulgare
Sequence
HVVMRXALLhA0181D12
Probe
HAR35_3329
i_11_21246
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source
Close, Timothy J.
Remark
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Marker name in barley Pilot OPA1 = 2_1246
Marker name in barley OPA1 = 11_21246
Original SNP name = 7624-359
Most representative HarvEST:Barley Assembly #32 Unigene = 7624
Most representative HarvEST:Barley Assembly #35 Unigene = 3329
HarvEST Unigene 35 Probe Set = Contig10688_at
Unigene 35 Rice Locus = LOC_Os02g02480
Description for best rice BLAST hit to Unigene 35 member = DNA binding protein, putative, expressed; E value = 5E-95
Marker name in barley Pilot OPA2 = 2_1246
Description for best rice BLAST hit to Unigene 35 member = protein DNA binding protein, putative, expressed; E value = 5E-95
BLAST hit in the rice genome = DNA binding protein, putative, expressed