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GrainGenes Locus Report: POPA2_1296

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Locus
POPA2_1296  [ Marker Report ]
Type
SNP
Synonym
Other name11_21296
BOPA1_11_21296
BOPA1_8034-315
Synonym11_21296
Chromosome
4H
Chromosome Arm
4HL
Map
Hordeum-OPA-2009-4H62.83
Hordeum-OPA123-2008-4H62.83
Hordeum-OPAConsensus-2011-4H71.71
Hordeum-OWB-OPA2008-4H61.136
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Barley, OWB, OPA2008
Species
Hordeum vulgare
Probe
HAR35_4438
i_11_21296
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source
Close, Timothy J.
Remark
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Marker name in barley Pilot OPA1 = 2_1296
Marker name in barley OPA1 = 11_21296
Original SNP name = 8034-315
Most representative HarvEST:Barley Assembly #32 Unigene = 8034
Most representative HarvEST:Barley Assembly #35 Unigene = 4438
HarvEST Unigene 35 Probe Set = Contig10310_at
Unigene 35 Rice Locus = LOC_Os03g14040
Description for best rice BLAST hit to Unigene 35 member = expressed protein; E value = 5E-69
Marker name in barley Pilot OPA2 = 2_1296
Original SNP name = U35_17521_1003
Description for best rice BLAST hit to Unigene 35 member = protein expressed protein; E value = 5E-69
BLAST hit in the rice genome = expressed protein