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GrainGenes Locus Report: POPA2_1312

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Locus
POPA2_1312  [ Marker Report ]
Type
SNP
Synonym
Other name11_21312
BOPA1_11_21312
BOPA1_8224-561
Synonym11_21312
BCD1449
Chromosome
1H
Chromosome Arm
1HL
Map
Barley, 2012 9KSNP 1H48.4
Hordeum-OPA-2009-1H52.46
Hordeum-OPA123-2008-1H52.46
Hordeum-OPAConsensus-2011-1H45.2
Hordeum-OWB-OPA2008-1H57.714
[ Show Nearby Loci ]
Map Data
Barley, 2012 9KSNP
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Barley, OWB, OPA2008
Species
Hordeum vulgare
Sequence
HVVMRXALLhA0070M16
Probe
HAR35_4090
i_11_21312
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source
Close, Timothy J.
Remark
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Marker name in barley Pilot OPA1 = 2_1312
Marker name in barley OPA1 = 11_21312
Original SNP name = 8224-561
Most representative HarvEST:Barley Assembly #32 Unigene = 8224
Most representative HarvEST:Barley Assembly #35 Unigene = 4090
HarvEST Unigene 35 Probe Set = Contig10424_at; HA30O21r_at
Unigene 35 Rice Locus = LOC_Os10g37410
Description for best rice BLAST hit to Unigene 35 member = GTPase activator protein of Rab-like small GTPases-like protein, putative, expressed; E value = 0
Marker name in barley Pilot OPA2 = 2_1312
Original SNP name = ABC06622_1_419
HarvEST Unigene 35 Probe Set = Contig10424_at, HA30O21r_at
Description for best rice BLAST hit to Unigene 35 member = protein GTPase activator protein of Rab-like small GTPases-like protein, putative, expressed; E value = 0
BLAST hit in the rice genome = GTPase activator protein of Rab-like small GTPases-like protein, putative, expressed