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GrainGenes Locus Report: POPA2_1318

[Submit comment/correction] [What is a locus?] A genetic locus is a specific position on a chromosome where a gene or genetic marker is located.

Locus
POPA2_1318  [ Marker Report ]
Type
SNP
Probe
HAR35_4239
i_11_21318
Synonym
Other name11_21318
BOPA1_11_21318
BOPA1_8320-955
Synonym11_21318
Chromosome
5H
Chromosome Arm
5HL
Map
Hordeum-OPA-2009-5H53.18
Hordeum-OPA123-2008-5H53.18
Hordeum-OPAConsensus-2011-5H44.23
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Species
Hordeum vulgare
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 12 ]
Marker name in barley Pilot OPA1 = 2_1318
Marker name in barley OPA1 = 11_21318
Original SNP name = 8320-955
Most representative HarvEST:Barley Assembly #32 Unigene = 8320
Most representative HarvEST:Barley Assembly #35 Unigene = 4239
HarvEST Unigene 35 Probe Set = Contig10883_at; HS05N24u_s_at
Unigene 35 Rice Locus = LOC_Os11g02464
Description for best rice BLAST hit to Unigene 35 member = vacuolar sorting receptor 1 precursor, putative, expressed; E value = 0
Marker name in barley Pilot OPA2 = 2_1318
HarvEST Unigene 35 Probe Set = Contig10883_at, HS05N24u_s_at
Description for best rice BLAST hit to Unigene 35 member = protein vacuolar sorting receptor 1 precursor, putative, expressed; E value = 0
BLAST hit in the rice genome = vacuolar sorting receptor 1 precursor, putative, expressed

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