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GrainGenes Locus Report: POPA2_1333

[Submit comment/correction][What is a locus?] A genetic locus is a specific position on a chromosome where a gene or genetic marker is located.

Locus
POPA2_1333  [ Marker Report ]
Type
SNP
Probe
HAR35_5111
i_11_21333
Synonym
Other name11_21333
BOPA1_11_21333
BOPA1_8486-1964
Synonym11_21333
MWG800
Chromosome
1H
Chromosome Arm
1HL
Map
Barley, 2012 9KSNP 1H52.5
Hordeum-OPA-2009-1H59.71
Hordeum-OPA123-2008-1H59.71
Hordeum-OPAConsensus-2011-1H52.63
Hordeum-OWB-OPA2008-1H65.371
[ Show Nearby Loci ]
Map Data
Barley, 2012 9KSNP
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Barley, OWB, OPA2008
Species
Hordeum vulgare
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 11 ]
Marker name in barley Pilot OPA1 = 2_1333
Marker name in barley OPA1 = 11_21333
Original SNP name = 8486-1964
Most representative HarvEST:Barley Assembly #32 Unigene = 8486
Most representative HarvEST:Barley Assembly #35 Unigene = 5111
HarvEST Unigene 35 Probe Set = Contig10752_at
Unigene 35 Rice Locus = LOC_Os10g41360
Description for best rice BLAST hit to Unigene 35 member = ubiquitin-protein ligase, putative, expressed; E value = 0
Marker name in barley Pilot OPA2 = 2_1333
Description for best rice BLAST hit to Unigene 35 member = protein ubiquitin-protein ligase, putative, expressed; E value = 0
BLAST hit in the rice genome = ubiquitin-protein ligase, putative, expressed

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