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GrainGenes Locus Report: POPA2_1385

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Locus
POPA2_1385  [ Marker Report ]
Type
SNP
Synonym
Other name11_21385
BOPA1_11_21385
BOPA1_9027-454
Synonym11_21385
Chromosome
4H
Chromosome Arm
4HS
Map
Hordeum-OPA-2009-4H23.1
Hordeum-OPA123-2008-4H23.1
Hordeum-OPAConsensus-2011-4H26.2
Hordeum-OWB-OPA2008-4H31.376
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Barley, OWB, OPA2008
Species
Hordeum vulgare
Probe
HAR35_19432
i_11_21385
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source
Close, Timothy J.
Remark
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Marker name in barley Pilot OPA1 = 2_1385
Marker name in barley OPA1 = 11_21385
Original SNP name = 9027-454
Most representative HarvEST:Barley Assembly #32 Unigene = 9027
Most representative HarvEST:Barley Assembly #35 Unigene = 19432
HarvEST Unigene 35 Probe Set = Contig11353_at
Unigene 35 Rice Locus = LOC_Os03g16369
Description for best rice BLAST hit to Unigene 35 member = serine/arginine repetitive matrix protein 1, putative, expressed; E value = 0.00000000000007
Marker name in barley Pilot OPA2 = 2_1385
Description for best rice BLAST hit to Unigene 35 member = protein serine/arginine repetitive matrix protein 1, putative, expressed; E value = 0.00000000000007
BLAST hit in the rice genome = serine/arginine repetitive matrix protein 1, putative, expressed