Query (optional)   in Class  

GrainGenes Locus Report: POPA2_1414

[ Printable Version ]  [ Submit comment/correction ]

Locus
POPA2_1414  [ Marker Report ]
Type
SNP
Synonym
Other name11_21414
BOPA1_11_21414
BOPA1_9426-490
Synonym11_21414
Chromosome
2H
Chromosome Arm
2HL
Map
Hordeum-OPA-2009-2H158.15
Hordeum-OPA123-2008-2H158.15
Hordeum-OWB-OPA2008-2H186.807
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus
Barley, OPA123-2008, Consensus
Barley, OWB, OPA2008
Species
Hordeum vulgare
Sequence
HVVMRXALLhA0355C20
Probe
HAR35_19216
i_11_21414
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 12 ]
Marker name in barley Pilot OPA1 = 2_1414
Marker name in barley OPA1 = 11_21414
Original SNP name = 9426-490
Most representative HarvEST:Barley Assembly #32 Unigene = 9426
Most representative HarvEST:Barley Assembly #35 Unigene = 19216
HarvEST Unigene 35 Probe Set = Contig12176_at; Contig23244_s_at
Unigene 35 Rice Locus = LOC_Os04g59394
Description for best rice BLAST hit to Unigene 35 member = TPR Domain containing protein, expressed; E value = 0.000000000001
Marker name in barley Pilot OPA2 = 2_1414
HarvEST Unigene 35 Probe Set = Contig12176_at, Contig23244_s_at
Description for best rice BLAST hit to Unigene 35 member = protein TPR Domain containing protein, expressed; E value = 0.000000000001
BLAST hit in the rice genome = TPR Domain containing protein, expressed