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GrainGenes Locus Report: POPA2_1415

[Submit comment/correction][What is a locus?] A genetic locus is a specific position on a chromosome where a gene or genetic marker is located.

Locus
POPA2_1415  [ Marker Report ]
Type
SNP
Probe
HAR35_19593
i_12_21415
Synonym
Other name12_21415
BOPA2_12_21415
Synonym12_21415
Chromosome
2H
Chromosome Arm
2HS
Map
Hordeum-OPA-2009-2H2.86
Hordeum-OPA123-2008-2H2.86
Hordeum-OPAConsensus-2011-2H3.84
Hordeum-OWB-OPA2008-2H5.492
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Barley, OWB, OPA2008
Species
Hordeum vulgare
Sequence
HVVMRXALLhA0253O23
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 12 ]
Marker name in barley Pilot OPA1 = 2_1415
Marker name in barley OPA1 = 12_21415
Original SNP name = 9452-210
Most representative HarvEST:Barley Assembly #32 Unigene = 9452
Most representative HarvEST:Barley Assembly #35 Unigene = 19593
HarvEST Unigene 35 Probe Set = Contig12065_at
Unigene 35 Rice Locus = LOC_Os04g05030
Description for best rice BLAST hit to Unigene 35 member = serine-rich 25 kDa antigen protein, putative, expressed; E value = 6E-53
Marker name in barley Pilot OPA2 = 2_1415
Marker name in barley OPA2 = 12_21415
Description for best rice BLAST hit to Unigene 35 member = protein serine-rich 25 kDa antigen protein, putative, expressed; E value = 6E-53
BLAST hit in the rice genome = serine-rich 25 kDa antigen protein, putative, expressed

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