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GrainGenes Locus Report: POPA2_1442

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Locus
POPA2_1442  [ Marker Report ]
Type
SNP
Synonym
Other name12_21442
BOPA2_12_21442
Synonym12_21442
BCD327
Chromosome
4H
Chromosome Arm
4HS
Map
Hordeum-OPA-2009-4H48.5
Hordeum-OPA123-2008-4H48.5
Hordeum-OPAConsensus-2011-4H56.22
Hordeum-OWB-OPA2008-4H52.267
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Barley, OWB, OPA2008
Species
Hordeum vulgare
Sequence
HVVMRXALLhA0503K03
Probe
HAR35_4710
i_12_21442
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 13 ]
Marker name in barley Pilot OPA1 = 2_1442
Marker name in barley OPA1 = 12_21442
Original SNP name = 9723-836
Most representative HarvEST:Barley Assembly #32 Unigene = 9723
Most representative HarvEST:Barley Assembly #35 Unigene = 4710
HarvEST Unigene 35 Probe Set = Contig12447_at
Unigene 35 Rice Locus = LOC_Os11g02190
Description for best rice BLAST hit to Unigene 35 member = expressed protein; E value = 1E-133
Marker name in barley Pilot OPA2 = 2_1442
Marker name in barley OPA2 = 12_21442
Original SNP name = UCI_Adh1_1279
Description for best rice BLAST hit to Unigene 35 member = protein expressed protein; E value = 1E-133
BLAST hit in the rice genome = expressed protein