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GrainGenes Locus Report: POPA2_1469

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Locus
POPA2_1469  [ Marker Report ]
Type
SNP
Synonym
Other name11_21469
BOPA1_11_21469
BOPA1_ABC03951-1-3-383
Synonym11_21469
Chromosome
6H
Chromosome Arm
6HL
Map
Barley, 2012 9KSNP 6H66.6
Hordeum-OPA-2009-6H67.7
Hordeum-OPA123-2008-6H67.7
Hordeum-OPAConsensus-2011-6H76.03
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Map Data
Barley, 2012 9KSNP
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Species
Hordeum vulgare
Sequence
HVVMRXALLhA0144O22
Probe
HAR35_15825
i_11_21469
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source
Close, Timothy J.
Remark
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Marker name in barley Pilot OPA1 = 2_1469
Marker name in barley OPA1 = 11_21469
Original SNP name = ABC03951-1-3-383
Most representative HarvEST:Barley Assembly #32 Unigene = 2762
Most representative HarvEST:Barley Assembly #35 Unigene = 15825
HarvEST Unigene 35 Probe Set = Contig3951_at
Unigene 35 Rice Locus = LOC_Os02g48964
Description for best rice BLAST hit to Unigene 35 member = WD-repeat protein-like, putative, expressed; E value = 0
Marker name in barley Pilot OPA2 = 2_1469
Description for best rice BLAST hit to Unigene 35 member = protein WD-repeat protein-like, putative, expressed; E value = 0
BLAST hit in the rice genome = WD-repeat protein-like, putative, expressed