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GrainGenes Locus Report: POPA2_1490

Locus
POPA2_1490  [ Marker Report ]
Type
SNP
Synonym
Synonym11_21490
Chromosome
4H
Chromosome Arm
4HS
Map
Hordeum-OPA-2009-4H46.41
Hordeum-OPA123-2008-4H46.41
Hordeum-OPAConsensus-2011-4H52.39
Hordeum-OWB-OPA2008-4H48.932
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Barley, OWB, OPA2008
Sequence
HVVMRXALLhA0414I03
Probe
HAR35_18704
Reference
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 11 ]
Marker name in barley Pilot OPA1 = 2_1490
Marker name in barley OPA1 = 11_21490
Original SNP name = ABC09891-1-1-28
Most representative HarvEST:Barley Assembly #32 Unigene = 7620
Most representative HarvEST:Barley Assembly #35 Unigene = 18704
HarvEST Unigene 35 Probe Set = Contig9891_at
Unigene 35 Rice Locus = LOC_Os11g17610
Description for best rice BLAST hit to Unigene 35 member = YKL151C, putative, expressed; E value = 1E-178
Marker name in barley Pilot OPA2 = 2_1490
Description for best rice BLAST hit to Unigene 35 member = protein YKL151C, putative, expressed; E value = 1E-178
BLAST hit in the rice genome = YKL151C, putative, expressed