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GrainGenes Locus Report: POPA2_1491

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Locus
POPA2_1491  [ Marker Report ]
Type
SNP
Synonym
Synonym11_21491
Chromosome
7H
Chromosome Arm
7HS
Map
Hordeum-OPA-2009-7H48.9
Hordeum-OPA123-2008-7H48.9
Hordeum-OPAConsensus-2011-7H41.51
Hordeum-OWB-OPA2008-7H47.614
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Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Barley, OWB, OPA2008
Sequence
HVVMRXALLhA0009K13
Probe
HAR35_4803
Reference
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source
Close, Timothy J.
Remark
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Marker name in barley Pilot OPA1 = 2_1491
Marker name in barley OPA1 = 11_21491
Original SNP name = ABC10361-1-3-316
Most representative HarvEST:Barley Assembly #32 Unigene = 7996
Most representative HarvEST:Barley Assembly #35 Unigene = 4803
HarvEST Unigene 35 Probe Set = Contig10361_at
Unigene 35 Rice Locus = LOC_Os06g08032
Description for best rice BLAST hit to Unigene 35 member = flavonol synthase/flavanone 3-hydroxylase, putative, expressed; E value = 1E-107
Marker name in barley Pilot OPA2 = 2_1491
Description for best rice BLAST hit to Unigene 35 member = protein flavonol synthase/flavanone 3-hydroxylase, putative, expressed; E value = 1E-107
BLAST hit in the rice genome = flavonol synthase/flavanone 3-hydroxylase, putative, expressed