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GrainGenes Locus Report: POPA3_0021

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Locus
POPA3_0021  [ Marker Report ]
Type
SNP
Synonym
Other name12_30021
BOPA2_12_30021
Synonym12_30021
cdo534
Chromosome
6H
Chromosome Arm
6HS
Map
Barley, 2012 9KSNP 6H53.6
Hordeum-OPA-2009-6H54.6
Hordeum-OPA123-2008-6H54.6
Hordeum-OPAConsensus-2011-6H58.48
Hordeum-OWB-OPA2008-6H66.332
[ Show Nearby Loci ]
Map Data
Barley, 2012 9KSNP
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Barley, OWB, OPA2008
Species
Hordeum vulgare
Sequence
HVVMRXALLhA0406H19
Probe
HAR35_1124
i_12_30021
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 14 ]
Marker name in barley Pilot OPA1 = 3_0021
Marker name in barley OPA1 = 12_30021
Original SNP name = ABC03232_1_76
Most representative HarvEST:Barley Assembly #32 Unigene = 2219
Most representative HarvEST:Barley Assembly #35 Unigene = 1124
HarvEST Unigene 35 Probe Set = Contig3232_at; HV_CEb0003K04f_s_at
Unigene 35 Rice Locus = LOC_Os02g10070
Description for best rice BLAST hit to Unigene 35 member = citrate synthase 4, mitochondrial precursor, putative, expressed; E value = 0
Marker name in barley Pilot OPA3 = 3_0021
Marker name in barley OPA2 = 12_30021
Original SNP name = U32_979_915
HarvEST Unigene 35 Probe Set = Contig3232_at, HV_CEb0003K04f_s_at
Description for best rice BLAST hit to Unigene 35 member = protein citrate synthase 4, mitochondrial precursor, putative, expressed; E value = 0
BLAST hit in the rice genome = citrate synthase 4, mitochondrial precursor, putative, expressed