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GrainGenes Locus Report: POPA3_0034

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Locus
POPA3_0034  [ Marker Report ]
Type
SNP
Chromosome
4H
Chromosome Arm
4HL
Map
Barley-Core-2014_4H54.95
Hordeum-OPA-2009-4H56.39
Hordeum-OPA123-2008-4H56.39
Hordeum-OPAConsensus-2011-4H65.94
Hordeum-OWB-OPA2008-4H54.441
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Barley, OWB, OPA2008
Barley, USDA Core, 2014 Consensus
Sequence
HVVMRXALLhA0437O10
Probe
HAR35_1661
Reference
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 11 ]
Marker name in barley Pilot OPA1 = 3_0034
Most representative HarvEST:Barley Assembly #32 Unigene = 3268
Most representative HarvEST:Barley Assembly #35 Unigene = 1661
HarvEST Unigene 35 Probe Set = Contig4605_at; Contig4605_s_at; Contig4607_at
Unigene 35 Rice Locus = LOC_Os03g16110
Description for best rice BLAST hit to Unigene 35 member = serine/threonine-protein phosphatase PP1, putative, expressed; E value = 0
Marker name in barley Pilot OPA3 = 3_0034
Original SNP name = ABC04607_1_975
HarvEST Unigene 35 Probe Set = Contig4605_at, Contig4605_s_at, Contig4607_at
Description for best rice BLAST hit to Unigene 35 member = protein serine/threonine-protein phosphatase PP1, putative, expressed; E value = 0
BLAST hit in the rice genome = serine/threonine-protein phosphatase PP1, putative, expressed