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GrainGenes Locus Report: POPA3_0039

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Locus
POPA3_0039  [ Marker Report ]
Type
SNP
Synonym
Other name12_30039
BOPA2_12_30039
Synonym12_30039
Chromosome
3H
Chromosome Arm
3HS
Map
Hordeum-OPA-2009-3H54.4
Hordeum-OPA123-2008-3H54.4
Hordeum-OPAConsensus-2011-3H67.27
Hordeum-OWB-OPA2008-3H62.951
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Barley, OWB, OPA2008
Species
Hordeum vulgare
Probe
HAR35_13881
i_12_30039
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source
Close, Timothy J.
Remark
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Marker name in barley Pilot OPA1 = 3_0039
Marker name in barley OPA1 = 12_30039
Original SNP name = ABC05558_1_907
Most representative HarvEST:Barley Assembly #32 Unigene = 3879
Most representative HarvEST:Barley Assembly #35 Unigene = 13881
HarvEST Unigene 35 Probe Set = Contig5558_at
Unigene 35 Rice Locus = LOC_Os01g24750
Description for best rice BLAST hit to Unigene 35 member = serine/threonine-protein phosphatase PP1, putative, expressed; E value = 0
Marker name in barley Pilot OPA3 = 3_0039
Marker name in barley OPA2 = 12_30039
Description for best rice BLAST hit to Unigene 35 member = protein serine/threonine-protein phosphatase PP1, putative, expressed; E value = 0
BLAST hit in the rice genome = serine/threonine-protein phosphatase PP1, putative, expressed