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GrainGenes Locus Report: POPA3_0057

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Locus
POPA3_0057  [ Marker Report ]
Type
SNP
Synonym
Synonym12_30057
Chromosome
6H
Chromosome Arm
6HL
Map
Hordeum-OPA-2009-6H121.22
Hordeum-OPA123-2008-6H121.22
Hordeum-OPAConsensus-2011-6H131.64
Hordeum-OWB-OPA2008-6H151.013
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Barley, OWB, OPA2008
Sequence
HVVMRXALLhA0485J10
Probe
HAR35_15907
Reference
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 14 ]
Marker name in barley Pilot OPA1 = 3_0057
Marker name in barley OPA1 = 12_30057
Original SNP name = ABC06568_1_657
Most representative HarvEST:Barley Assembly #32 Unigene = 4712
Most representative HarvEST:Barley Assembly #35 Unigene = 15907
HarvEST Unigene 35 Probe Set = Contig6569_at; Contig6569_s_at; HVSMEk0017E01r2_s_at
Unigene 35 Rice Locus = LOC_Os02g32490
Description for best rice BLAST hit to Unigene 35 member = acetyl-coenzyme A synthetase, putative, expressed; E value = 0
Marker name in barley Pilot OPA3 = 3_0057
Marker name in barley OPA2 = 12_30057
Original SNP name = U35_15956_1489
HarvEST Unigene 35 Probe Set = Contig6569_at, Contig6569_s_at, HVSMEk0017E01r2_s_at
Description for best rice BLAST hit to Unigene 35 member = protein acetyl-coenzyme A synthetase, putative, expressed; E value = 0
BLAST hit in the rice genome = acetyl-coenzyme A synthetase, putative, expressed