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GrainGenes Locus Report: POPA3_0080

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Locus
POPA3_0080  [ Marker Report ]
Type
SNP
Synonym
Other name12_30080
BOPA2_12_30080
Synonym12_30080
Chromosome
5H
Chromosome Arm
5HL
Map
Hordeum-OPA-2009-5H69.9
Hordeum-OPA123-2008-5H69.9
Hordeum-OPAConsensus-2011-5H60.21
Hordeum-OWB-OPA2008-5H73.69
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Barley, OWB, OPA2008
Species
Hordeum vulgare
Sequence
HVVMRXALLhA0338E01
Probe
HAR35_15265
i_12_30080
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source
Close, Timothy J.
Remark
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Marker name in barley Pilot OPA1 = 3_0080
Marker name in barley OPA1 = 12_30080
Original SNP name = ABC07516_1_341
Most representative HarvEST:Barley Assembly #32 Unigene = 5098
Most representative HarvEST:Barley Assembly #35 Unigene = 15265
HarvEST Unigene 35 Probe Set = Contig7516_at
Unigene 35 Rice Locus = LOC_Os09g26620
Description for best rice BLAST hit to Unigene 35 member = auxin-repressed protein, putative, expressed; E value = 2E-51
Marker name in barley Pilot OPA3 = 3_0080
Marker name in barley OPA2 = 12_30080
Description for best rice BLAST hit to Unigene 35 member = protein auxin-repressed protein, putative, expressed; E value = 2E-51
BLAST hit in the rice genome = auxin-repressed protein, putative, expressed