GrainGenes

GrainGenes Locus Report: POPA3_0090

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Locus	POPA3_0090  [ Marker Report ]
Type	SNP
Probe	HAR35_17441 i_12_30090
Synonym	Other name 12_30090 BOPA2_12_30090 Synonym 12_30090
Chromosome	3H
Chromosome Arm	3HL
Map	Barley, 2012 9KSNP 3H 86 Hordeum-OPA-2009-3H 97.71 Hordeum-OPA123-2008-3H 97.71 Hordeum-OPAConsensus-2011-3H 108 Hordeum-OWB-OPA2008-3H 112.809
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Map Data	Barley, 2012 9KSNP Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, OWB, OPA2008
Species	Hordeum vulgare
Sequence	HVVMRXALLhA0361J15
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 12 ] Marker name in barley Pilot OPA1 = 3_0090 Marker name in barley OPA1 = 12_30090 Original SNP name = ABC07895_1_382 Most representative HarvEST:Barley Assembly #32 Unigene = 5937 Most representative HarvEST:Barley Assembly #35 Unigene = 17441 HarvEST Unigene 35 Probe Set = Contig7895_at Unigene 35 Rice Locus = LOC_Os01g65100 Description for best rice BLAST hit to Unigene 35 member = POT family protein, expressed; E value = 1E-149 Marker name in barley Pilot OPA3 = 3_0090 Marker name in barley OPA2 = 12_30090 Description for best rice BLAST hit to Unigene 35 member = protein POT family protein, expressed; E value = 1E-149 BLAST hit in the rice genome = POT family protein, expressed

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