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GrainGenes Locus Report: POPA3_0092

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Locus
POPA3_0092  [ Marker Report ]
Type
SNP
Probe
HAR35_17348
i_12_30092
Synonym
Other name12_30092
BOPA2_12_30092
Synonym12_30092
BCD358
Chromosome
3H
Chromosome Arm
3HL
Map
Hordeum-OPA-2009-3H134.31
Hordeum-OPA123-2008-3H134.31
Hordeum-OPAConsensus-2011-3H143.33
Hordeum-OWB-OPA2008-3H159.209
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Barley, OWB, OPA2008
Species
Hordeum vulgare
Sequence
HVVMRXALLhA0290N03
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 12 ]
Marker name in barley Pilot OPA1 = 3_0092
Marker name in barley OPA1 = 12_30092
Original SNP name = ABC07973_1_264
Most representative HarvEST:Barley Assembly #32 Unigene = 6032
Most representative HarvEST:Barley Assembly #35 Unigene = 17348
HarvEST Unigene 35 Probe Set = Contig7973_at
Unigene 35 Rice Locus = LOC_Os01g69920
Description for best rice BLAST hit to Unigene 35 member = histidine kinase 2, putative, expressed; E value = 0
Marker name in barley Pilot OPA3 = 3_0092
Marker name in barley OPA2 = 12_30092
Description for best rice BLAST hit to Unigene 35 member = protein histidine kinase 2, putative, expressed; E value = 0
BLAST hit in the rice genome = histidine kinase 2, putative, expressed

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