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GrainGenes Locus Report: POPA3_0135

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Locus
POPA3_0135  [ Marker Report ]
Type
SNP
Synonym
Other name12_30135
BOPA2_12_30135
Synonym12_30135
Chromosome
3H
Chromosome Arm
3HL
Map
Hordeum-OPA-2009-3H173.17
Hordeum-OPA123-2008-3H173.17
Hordeum-OPAConsensus-2011-3H179.81
Hordeum-OWB-OPA2008-3H206.905
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Barley, OWB, OPA2008
Species
Hordeum vulgare
Sequence
HVVMRXALLhA0005H02
Probe
HAR35_3927
i_12_30135
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source
Close, Timothy J.
Remark
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Marker name in barley Pilot OPA1 = 3_0135
Marker name in barley OPA1 = 12_30135
Original SNP name = ABC09967_1_296
Most representative HarvEST:Barley Assembly #32 Unigene = 7744
Most representative HarvEST:Barley Assembly #35 Unigene = 3927
HarvEST Unigene 35 Probe Set = Contig9967_at
Unigene 35 Rice Locus = LOC_Os01g66830
Description for best rice BLAST hit to Unigene 35 member = carboxylic ester hydrolase, putative, expressed; E value = 8E-70
Marker name in barley Pilot OPA3 = 3_0135
Marker name in barley OPA2 = 12_30135
Description for best rice BLAST hit to Unigene 35 member = protein carboxylic ester hydrolase, putative, expressed; E value = 8E-70
BLAST hit in the rice genome = carboxylic ester hydrolase, putative, expressed