Query (optional)   in Class  

GrainGenes Locus Report: POPA3_0150

[ Printable Version ]  [ Submit comment/correction ]

Locus
POPA3_0150  [ Marker Report ]
Type
SNP
Synonym
Other name12_30150
BOPA2_12_30150
Synonym12_30150
Chromosome
4H
Chromosome Arm
4HS
Map
Hordeum-OPA-2009-4H18.01
Hordeum-OPA123-2008-4H18.01
Hordeum-OPAConsensus-2011-4H16.96
Hordeum-OWB-OPA2008-4H23.743
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Barley, OWB, OPA2008
Species
Hordeum vulgare
Sequence
HVVMRXALLhA0247B13
Probe
HAR35_18368
i_12_30150
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 12 ]
Marker name in barley Pilot OPA1 = 3_0150
Marker name in barley OPA1 = 12_30150
Original SNP name = ABC10624_1_1026
Most representative HarvEST:Barley Assembly #32 Unigene = 8170
Most representative HarvEST:Barley Assembly #35 Unigene = 18368
HarvEST Unigene 35 Probe Set = Contig10624_at
Unigene 35 Rice Locus = LOC_Os03g48030
Description for best rice BLAST hit to Unigene 35 member = HPP, putative, expressed; E value = 1E-83
Marker name in barley Pilot OPA3 = 3_0150
Marker name in barley OPA2 = 12_30150
Description for best rice BLAST hit to Unigene 35 member = protein HPP, putative, expressed; E value = 1E-83
BLAST hit in the rice genome = HPP, putative, expressed