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GrainGenes Locus Report: POPA3_0268

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Locus
POPA3_0268  [ Marker Report ]
Type
SNP
Synonym
Other name12_30268
BOPA2_12_30268
Synonym12_30268
Chromosome
1H
Chromosome Arm
1HS
Map
Hordeum-OPA-2009-1H42.52
Hordeum-OPA123-2008-1H42.52
Hordeum-OPAConsensus-2011-1H36.64
Hordeum-OWB-OPA2008-1H52.129
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Barley, OWB, OPA2008
Species
Hordeum vulgare
Probe
HAR35_6967
i_12_30268
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source
Close, Timothy J.
Remark
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Marker name in barley Pilot OPA1 = 3_0268
Marker name in barley OPA1 = 12_30268
Original SNP name = ABC18274_1_268
Most representative HarvEST:Barley Assembly #32 Unigene = 13742
Most representative HarvEST:Barley Assembly #35 Unigene = 6967
HarvEST Unigene 35 Probe Set = Contig18274_at
Unigene 35 Rice Locus = LOC_Os05g03610
Description for best rice BLAST hit to Unigene 35 member = phospholipase C, putative, expressed; E value = 1E-144
Marker name in barley Pilot OPA3 = 3_0268
Marker name in barley OPA2 = 12_30268
Description for best rice BLAST hit to Unigene 35 member = protein phospholipase C, putative, expressed; E value = 1E-144
BLAST hit in the rice genome = phospholipase C, putative, expressed