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GrainGenes Locus Report: POPA3_0284

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Locus
POPA3_0284  [ Marker Report ]
Type
SNP
Synonym
Synonym12_30284
Chromosome
3H
Chromosome Arm
3HS
Map
Hordeum-OPA-2009-3H28.44
Hordeum-OPA123-2008-3H28.44
Hordeum-OPAConsensus-2011-3H29.75
Hordeum-OWB-OPA2008-3H31.839
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Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Barley, OWB, OPA2008
Probe
HAR35_26260
Reference
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 12 ]
Marker name in barley Pilot OPA1 = 3_0284
Marker name in barley OPA1 = 12_30284
Original SNP name = ABC22737_1_28
Most representative HarvEST:Barley Assembly #32 Unigene = 23874
Most representative HarvEST:Barley Assembly #35 Unigene = 26260
HarvEST Unigene 35 Probe Set = Contig22737_at
Unigene 35 Rice Locus = LOC_Os11g33110
Description for best rice BLAST hit to Unigene 35 member = germin-like protein subfamily 3 member 4 precursor, putative, expressed; E value = 1E-97
Marker name in barley Pilot OPA3 = 3_0284
Marker name in barley OPA2 = 12_30284
Description for best rice BLAST hit to Unigene 35 member = protein germin-like protein subfamily 3 member 4 precursor, putative, expressed; E value = 1E-97
BLAST hit in the rice genome = germin-like protein subfamily 3 member 4 precursor, putative, expressed