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GrainGenes Locus Report: POPA3_0379

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Locus
POPA3_0379  [ Marker Report ]
Type
SNP
Synonym
Other name12_30379
BOPA2_12_30379
Synonym12_30379
Chromosome
2H
Chromosome Arm
2HS
Map
Hordeum-OPA-2009-2H46.26
Hordeum-OPA123-2008-2H46.26
Hordeum-OPAConsensus-2011-2H48.8
Hordeum-OWB-OPA2008-2H57.388
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Barley, OWB, OPA2008
Species
Hordeum vulgare
Probe
HAR35_591
i_12_30379
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 13 ]
Marker name in barley Pilot OPA1 = 3_0379
Marker name in barley OPA1 = 12_30379
Original SNP name = U32_1472_575
Most representative HarvEST:Barley Assembly #32 Unigene = 1472
Most representative HarvEST:Barley Assembly #35 Unigene = 591
HarvEST Unigene 35 Probe Set = Contig2136_at; HY09G23u_s_at
Unigene 35 Rice Locus = LOC_Os07g46750
Description for best rice BLAST hit to Unigene 35 member = elongation factor 1-beta, putative, expressed; E value = 2E-96
Marker name in barley Pilot OPA3 = 3_0379
Marker name in barley OPA2 = 12_30379
HarvEST Unigene 35 Probe Set = Contig2136_at, HY09G23u_s_at
Description for best rice BLAST hit to Unigene 35 member = protein elongation factor 1-beta, putative, expressed; E value = 2E-96
BLAST hit in the rice genome = elongation factor 1-beta, putative, expressed